Tag: SNP
-
Variant Calling for Microbial Genomes Using Short- and Long-Reads
Variant calling is a fundamental analysis in microbial genomics. It has a range of applications: diagnosing clinical pathogenic strains during an infection, understanding an epidemic, genotyping, and, more generally, studying evolution. There are so many SNP analysis pipelines. Then why am I writing this tutorial—and what new approach am I adding? Well, the pipeline in…