August 31, 2026
Research Associate
Weisberg Lab, BPP, Oregon State University
August 31, 2026
Computational Biologist
- My research focus is understanding host-pathogen interactions, plasmid dynamics and EvoEco Epidemiology.
- I use NGS to resolve patterns of mobile genetic elements mediated transmission of disease and host-adaptation.
- I build scalable bioinformatics softwares and reproducible analysis workflows.
Professional Timeline
July 4, 2023
Postdoctoral Researcher
Weisberg Lab, BPP, Oregon State University
July 4, 2023
September 7, 2017
Ph.D. in Genetics, Genomics, Bioinformatics
Sachs Lab, EEOB, UC Riverside
September 7, 2017
October 5, 2015
Lecturer
Department of Microbiology, Noakhali Science and Technology University
October 5, 2015
February 17, 2013
M.Sc. in Microbiology
Department of Microbiology, University of Dhaka
February 17, 2013
February 15, 2009
B.Sc. in Microbiology
Department of Microbiology, University of Dhaka
February 15, 2009
Featured Bioinformatics Tools
Beav
A command line pipeline that streamlines bacterial genome and mobile genetic element annotation, available in Bioconda and now developing NextFlow.
TangleR
R package that offers simple functions to draw beautiful, publication-ready tanglegrams based on ggtree
PySyntenyViz
A CLI to create and annotate synteny plots for microbial genomes or plasmids. Available in PyPI and Docker.
How To Tutorials
Variant Calling for Microbial Genomes Using Short- and Long-Reads
Variant calling is a fundamental analysis in microbial genomics. It has a range of applications: diagnosing clinical pathogenic strains during an infection, understanding an epidemic, genotyping, and,…
Microbial ortholog gene clustering using real-dataset
Once we assembled and annotated bacterial genomes, next step after inferring phylogeny usually is to finding and clustering orthologous genes. What are orthologs? Well, Genetics 101 tells…
Hybrid Assembly of Bacterial Genome
This is Part 4 of tutorial series: NGS Workflow for Genome Assembly to Annotation for Hybrid Bacterial Data We’ll be use hybrid sequencing data (Illumina and Nanopore). This…
Microbial De Novo Genome Assembly from Long-Read Data
This is Part 3 of tutorial series: NGS Workflow for Genome Assembly to Annotation for Hybrid Bacterial Data We’ll be use hybrid sequencing data (Illumina and Nanopore). This…
Microbial De Novo Genome Assembly from Short-Read Data
This is yet another tutorial on microbial genome assembly. This is actually the Part 2 of tutorial series: NGS Workflow for Genome Assembly to Annotation for Hybrid Bacterial…
Programmatically Downloading Raw Data from NCBI
This is part of tutorial series: NGS Workflow for Genome Assembly to Annotation for Hybrid Bacterial Data We’ll be use hybrid sequencing data (Illumina and Nanopore). This…
A Passion for Science Communication
I write on biological science for public in Bengali language.
Author of Published Books
- A book on genetics: জেনেটিক্স বংশগতিবিদ্যার সহজপাঠ
- Translation of selected science articles: প্রাণের বিজ্ঞান
- A pocket-book on how brain works: মস্তিষ্ক, ঘুম ও স্বপ্ন