Python For Bioinformatics

Py4Bio

Section 1: Fundamentals of Python

• Chapter 1: Strings
• Chapter 2: List
• Chapter 3: The for loop
• Chapter 4: if and files
• Chapter 5: while, elif, and write
• Chapter 6: Dictionaries
• Chapter 7: Functions

Section 2: Essential Modules

• Chapter 8: NumPy
• Chapter 9: Pandas
• Chapter 10: Matplotlib and Seaborn
• Chapter 11: Intro to OOP and Biopython
• Chapter 12: Dealing with genomic feature in Biopython

Section 3: Advanced Topics

• Chapter 13: Advanced scripting with Argparse
• Chapter 14: OOP
• Chapter 15: From scripting to CLI
• Chapter 16: Environment management with Conda